Glyma18g44250 - SoyBase

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Report for Sequence Feature Glyma18g44250

Feature Type:	gene_model
Chromosome:	Gm18
Start:	53916263
stop:	53923870
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g44250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G08860	AT	Annotation by Michelle Graham. TAIR10: PYRIMIDINE 4 \| chr3:2696754-2699087 REVERSE LENGTH=481	SoyBase	E_val: 0	ISS
GO:0007568	GO-bp	Annotation by Michelle Graham. GO Biological Process: aging	SoyBase	N/A	ISS
GO:0009830	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification involved in abscission	SoyBase	N/A	ISS
GO:0043562	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen levels	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008453	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alanine-glyoxylate transaminase activity	SoyBase	N/A	ISS
GO:0008483	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transaminase activity	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
KOG1404	KOG	Alanine-glyoxylate aminotransferase AGT2	JGI		ISS
PTHR11986	Panther	AMINOTRANSFERASE CLASS III	JGI		ISS
PTHR11986:SF23	Panther	AMINOTRANSFERASE	JGI		ISS
PF00202	PFAM	Aminotransferase class-III	JGI		ISS
UniRef100_G7KX17	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alanine glyoxylate aminotransferase-like protein n=1 Tax=Medicago truncatula RepID=G7KX17_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N358	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N358_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g44250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44250

Paralog	Evidence	Comments
Glyma09g41490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g210500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g44250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g44250

Limit To All Plant Sequences

>Glyma18g44250.1   sequence type=CDS   gene model=Glyma18g44250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGGATCCCTCGCGGCAAGGCTCGTCCTTCGTCGTTGCCGATCGCCGGCAAGTCAATTCTTCTTCCGCAGGGAAGCCTCCTGGCCGGCGACGGAGCGAACGACAAAGGACGTCGTTACGTCGCCGCCGAAGGAATTGCCGGCGTTCGACTACTCTCCGCCGGCGTACTCCGGTCCCTCCCGCGACGAGATCATCGCGAAGCGCCGGGAGTACCTCAGCCCTTCGATCTTCCACAACTACAAATCTCCGCTGAACGTGGTGGAGGGGAAGAGGCAGTACCTGTTCGACGATAAGGGAAGGAGGTATCTCGACGCGTTCGGAGGGATTGCTACGGTGTGCTGCGGGCACTGCCACCCCGATGTGGTGGAGGCCATCGTGGAACAAACGAAGCGGTTGCAGCACTCCACAGTTCTGTACCTGAACCATGCCATAACGGATTTTGCTGAGGCTTTGGCTGCTAAGCTTCCCGGTAATCTTAAGGTGGCATTTTTTACAAATTCTGGAACGGAAGCAAACGAATTGGCAATACTGATAGCAAAATTGTACACTGGCTCCCATGACATAATATCTCTAAGGAATTCTTACCATGGGAATGGTGGTGGAACGATGGGGACCACAGCTCAAAGCATTTGGAAATATAATGTTGTGCAGAGTGGTGTTCATCATGCGGTGAATCCAGACCCTTATCGAGGCCTTTTCGGTTCTGATGGAGAGAAGTATGTAAGAGATGTTCAAGAAATCATTAATTTTGGAACTTCCGGAAATGTTGCAGCTTTCATATCTGAAGCGATACAGGGAGTAGGGGGCATCGTTGAACTGGCTCCTGGTTACTTGCCTGCTGCCTACGATATTGTTAGAAAAGCTGGAGGTCTTTGCATTGCCGACGAGGTTCAGACGGGAATTGCTCGCACCGGTAGCCATTTCTGGGGATTTGAGGCCCATGGTGTTGTACCTGACATAGTAACAATAGCAAAGAGCATTGGAAACGGCATTCCTCTTGGTGCTGTTGTGACAACTCCTGAGATTGCGAAGGCATTGACTCGCCGGAGTTACTTCAACACCTTTGGTGGGAATCCTGTTTGCACTGCTGCAGGATTGGCTGTTTTGAGAGTGATAGAGAAAGAGAAGCTTCAAGAAAATGCTTTTGTAGTGGGTTCCTATTTGAAAGAGAGACTCAATGCACTCAAGGACAAATATGAATTAATTGGTGATGTTAGAGGAAGAGGCATGATGCTTGGAGTTGAACTTGTCAGTGATGGCAAACTTAAAACACCAGCACAAAGTGAAACACTGCATGTGATGGACCAAATGAAAGAATTAGGAGTGCTGATTGGAAAGGGTGGCTATTATGGAAATGTATTCAGAATTACACCACCCCTATGTTTCACCAAAGAAGATGCAGACTTCCTTGTGGATGCGATGGACTACACATTTTCCAGAATGTGA

Predicted protein sequences of Glyma18g44250

Limit To All Plant Sequences

>Glyma18g44250.1   sequence type=predicted peptide   gene model=Glyma18g44250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTGSLAARLVLRRCRSPASQFFFRREASWPATERTTKDVVTSPPKELPAFDYSPPAYSGPSRDEIIAKRREYLSPSIFHNYKSPLNVVEGKRQYLFDDKGRRYLDAFGGIATVCCGHCHPDVVEAIVEQTKRLQHSTVLYLNHAITDFAEALAAKLPGNLKVAFFTNSGTEANELAILIAKLYTGSHDIISLRNSYHGNGGGTMGTTAQSIWKYNVVQSGVHHAVNPDPYRGLFGSDGEKYVRDVQEIINFGTSGNVAAFISEAIQGVGGIVELAPGYLPAAYDIVRKAGGLCIADEVQTGIARTGSHFWGFEAHGVVPDIVTIAKSIGNGIPLGAVVTTPEIAKALTRRSYFNTFGGNPVCTAAGLAVLRVIEKEKLQENAFVVGSYLKERLNALKDKYELIGDVRGRGMMLGVELVSDGKLKTPAQSETLHVMDQMKELGVLIGKGGYYGNVFRITPPLCFTKEDADFLVDAMDYTFSRM*

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